SuccessConsole Output

Skipping 1,480 KB.. Full Log
2578:17: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned long') [-Wsign-compare]
        if (last<projROI[1]) {
            ~~~~^~~~~~~~~~~
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2582:23: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int' [-Wsign-compare]
        if (projROI[3]<last) {
            ~~~~~~~~~~^~~~~
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2588:19: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int' [-Wsign-compare]
    if (projROI[3]<last) {
        ~~~~~~~~~~^~~~~
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2590:23: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'int' [-Wsign-compare]
        if (projROI[3]<first) {
            ~~~~~~~~~~^~~~~~
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2792:75: warning: unused parameter 'arg1' [-Wunused-parameter]
void MuhRecMainWindow::on_doubleSpinBox_magnification_valueChanged(double arg1)
                                                                          ^
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2797:64: warning: unused parameter 'arg1' [-Wunused-parameter]
void MuhRecMainWindow::on_dspinPiercPointX_valueChanged(double arg1)
                                                               ^
../../imagingsuite/applications/muhrec/src/muhrecmainwindow.cpp:2802:64: warning: unused parameter 'arg1' [-Wunused-parameter]
void MuhRecMainWindow::on_dspinPiercPointY_valueChanged(double arg1)
                                                               ^
17 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o MuhrecInteractor.o ../../imagingsuite/applications/muhrec/src/MuhrecInteractor.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o configuregeometrydialog.o ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:3:
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:3:
../../imagingsuite/applications/muhrec/src/configuregeometrydialog.h:24:17: warning: 'ConfigureGeometryDialog::exec' hides overloaded virtual function [-Woverloaded-virtual]
    virtual int exec(ReconConfig &config);
                ^
/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers/qdialog.h:92:17: note: hidden overloaded virtual function 'QDialog::exec' declared here: different number of parameters (0 vs 1)
    virtual int exec();
                ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:18:
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:54:67: warning: unused parameter 'src' [-Wunused-parameter]
        virtual void InitResultArray(kipl::base::TImage<T,nDims> &src, kipl::base::TImage<T,nDims> &dest) {}
                                                                  ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:54:101: warning: unused parameter 'dest' [-Wunused-parameter]
        virtual void InitResultArray(kipl::base::TImage<T,nDims> &src, kipl::base::TImage<T,nDims> &dest) {}
                                                                                                    ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:55:48: warning: unused parameter 'src' [-Wunused-parameter]
        virtual void InnerLoop(T const * const src, T *dest, T value, size_t N) {} // Dummy
                                               ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:55:56: warning: unused parameter 'dest' [-Wunused-parameter]
        virtual void InnerLoop(T const * const src, T *dest, T value, size_t N) {} // Dummy
                                                       ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:55:64: warning: unused parameter 'value' [-Wunused-parameter]
        virtual void InnerLoop(T const * const src, T *dest, T value, size_t N) {} // Dummy
                                                               ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:55:78: warning: unused parameter 'N' [-Wunused-parameter]
        virtual void InnerLoop(T const * const src, T *dest, T value, size_t N) {} // Dummy
                                                                             ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:18:
In file included from ../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:89:
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:70:18: warning: unused variable 'paceZ' [-Wunused-variable]
    const size_t paceZ  = 2 < nDims ? src.Size(1)*src.Size(0) : 0;
                 ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:61:9: warning: unused variable 'endZ' [-Wunused-variable]
    int endZ   = 2 < nDims ? this->nKernelDims[2]-nHalfKernel[2] : 1 ;
        ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:60:9: warning: unused variable 'startZ' [-Wunused-variable]
    int startZ = 2 < nDims ? -nHalfKernel[2] : 0 ;
        ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:53:157: warning: unused parameter 'edgeStyle' [-Wunused-parameter]
int TMedianFilter<T,nDims>::ExtractNeighborhood(kipl::base::TImage<T,nDims> &src, size_t const * const pos, T * data, const FilterBase::EdgeProcessingStyle edgeStyle)
                                                                                                                                                            ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:287:79: warning: unused parameter 'src' [-Wunused-parameter]
void TMedianFilter<T,nDims>::BilevelMedianFilter(kipl::base::TImage<T,nDims> &src, 
                                                                              ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:288:32: warning: unused parameter 'result' [-Wunused-parameter]
                kipl::base::TImage<T,nDims> &result, 
                                             ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:289:41: warning: unused parameter 'edgeStyle' [-Wunused-parameter]
                const FilterBase::EdgeProcessingStyle edgeStyle)
                                                      ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:296:68: warning: unused parameter 'src' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowLineInit(T const * const src, T *dest,size_t const * const dims)
                                                                   ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:296:76: warning: unused parameter 'dest' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowLineInit(T const * const src, T *dest,size_t const * const dims)
                                                                           ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:296:102: warning: unused parameter 'dims' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowLineInit(T const * const src, T *dest,size_t const * const dims)
                                                                                                     ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:302:64: warning: unused parameter 'src' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowLine(T const * const src, T *dest, size_t)
                                                               ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:302:72: warning: unused parameter 'dest' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowLine(T const * const src, T *dest, size_t)
                                                                       ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:309:85: warning: unused parameter 'src' [-Wunused-parameter]
void TMedianFilter<T,nDims>::RunningWindowMedianFilter(kipl::base::TImage<T,nDims> &src, 
                                                                                    ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:310:32: warning: unused parameter 'result' [-Wunused-parameter]
                kipl::base::TImage<T,nDims> &result, 
                                             ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:311:41: warning: unused parameter 'edgeStyle' [-Wunused-parameter]
                const FilterBase::EdgeProcessingStyle edgeStyle)
                                                      ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:22:
In file included from ../../imagingsuite/core/kipl/kipl/include/morphology/core/../morphfilters.h:32:
../../imagingsuite/core/kipl/kipl/include/morphology/core/morphfilters.hpp:13:54: warning: unused parameter 'value' [-Wunused-parameter]
void ErodeInnerLoop(T const * const src, T * dest, T value, size_t N)
                                                     ^
../../imagingsuite/core/kipl/kipl/include/morphology/core/morphfilters.hpp:22:55: warning: unused parameter 'value' [-Wunused-parameter]
void DilateInnerLoop(T const * const src, T * dest, T value, size_t N)
                                                      ^
../../imagingsuite/core/kipl/kipl/include/morphology/core/morphfilters.hpp:48:68: warning: unused parameter 'src' [-Wunused-parameter]
void TErode<T,nDims>::InitResultArray(kipl::base::TImage<T,nDims> &src, kipl::base::TImage<T,nDims> &dest)
                                                                   ^
../../imagingsuite/core/kipl/kipl/include/morphology/core/morphfilters.hpp:75:69: warning: unused parameter 'src' [-Wunused-parameter]
void TDilate<T,nDims>::InitResultArray(kipl::base::TImage<T,nDims> &src, kipl::base::TImage<T,nDims> &dest)
                                                                    ^
../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:126:81: warning: unused parameter 'proj_180' [-Wunused-parameter]
                                                    kipl::base::TImage<float,2> proj_180,
                                                                                ^
../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:640:74: warning: unused parameter 'arg1' [-Wunused-parameter]
void ConfigureGeometryDialog::on_dspinCenterRotation_valueChanged(double arg1)
                                                                         ^
../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:670:60: warning: unused parameter 'arg1' [-Wunused-parameter]
void ConfigureGeometryDialog::on_groupUseTilt_toggled(bool arg1)
                                                           ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:18:
In file included from ../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:89:
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:56:43: warning: comparison of integers of different signs: 'const size_t' (aka 'const unsigned long') and 'int' [-Wsign-compare]
    int edgeinfo=static_cast<int> ((pos[0]<nHalfKernel[0]) + (((src.Size(0)-nHalfKernel[0]-1)<pos[0]) * 2) +
                                    ~~~~~~^~~~~~~~~~~~~~~
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:191:5: note: in instantiation of member function 'kipl::filters::TMedianFilter<float, 2>::ExtractNeighborhood' requested here
                                ExtractNeighborhood(src,pos,kern,edgeStyle);
                                ^
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:36:2: note: in instantiation of member function 'kipl::filters::TMedianFilter<float, 2>::HeapSortMedianFilter' requested here
        HeapSortMedianFilter(src, result, edgeStyle);
        ^
../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:28:3: note: in instantiation of member function 'kipl::filters::TMedianFilter<float, 2>::operator()' requested here
                TMedianFilter(size_t const * const Dims) ;
                ^
../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:314:43: note: in instantiation of member function 'kipl::filters::TMedianFilter<float, 2>::TMedianFilter' requested here
    kipl::filters::TMedianFilter<float,2> medfilt(filtdims);
                                          ^
In file included from ../../imagingsuite/applications/muhrec/src/configuregeometrydialog.cpp:18:
In file included from ../../imagingsuite/core/kipl/kipl/include/filters/medianfilter.h:89:
../../imagingsuite/core/kipl/kipl/include/filters/core/medianfilter.hpp:57:21: warning: comparison of integers of different signs: 'const size_t' (aka 'const unsigned long') and 'int' [-Wsign-compare]
            ((pos[1]<nHalfKernel[1]) * 4)  + (((src.Size(1)-nHalfKernel[1]-1)<pos[1]) * 8)) ;
              ~~~~~~^~~~~~~~~~~~~~~
35 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o findskiplistdialog.o ../../imagingsuite/applications/muhrec/src/findskiplistdialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/findskiplistdialog.cpp:3:
In file included from ../../imagingsuite/applications/muhrec/src/findskiplistdialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o recondialog.o ../../imagingsuite/applications/muhrec/src/recondialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/recondialog.cpp:6:
In file included from ../../imagingsuite/applications/muhrec/src/recondialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconEngine.h:19:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/PreprocModuleBase.h:29:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o PreProcModuleConfigurator.o ../../imagingsuite/applications/muhrec/src/PreProcModuleConfigurator.cpp
In file included from ../../imagingsuite/applications/muhrec/src/PreProcModuleConfigurator.cpp:3:
In file included from ../../imagingsuite/applications/muhrec/src/PreProcModuleConfigurator.h:12:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o stdafx.o ../../imagingsuite/applications/muhrec/src/stdafx.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o viewgeometrylistdialog.o ../../imagingsuite/applications/muhrec/src/viewgeometrylistdialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/viewgeometrylistdialog.cpp:1:
In file included from ../../imagingsuite/applications/muhrec/src/viewgeometrylistdialog.h:12:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o preferencesdialog.o ../../imagingsuite/applications/muhrec/src/preferencesdialog.cpp
../../imagingsuite/applications/muhrec/src/preferencesdialog.cpp:8:5: warning: field 'ui' will be initialized after field 'm_MemoryLimit' [-Wreorder]
    ui(new Ui::PreferencesDialog),
    ^
1 warning generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o dialogtoobig.o ../../imagingsuite/applications/muhrec/src/dialogtoobig.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o piercingpointdialog.o ../../imagingsuite/applications/muhrec/src/piercingpointdialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/piercingpointdialog.cpp:3:
In file included from ../../imagingsuite/applications/muhrec/src/piercingpointdialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
In file included from ../../imagingsuite/applications/muhrec/src/piercingpointdialog.cpp:3:
../../imagingsuite/applications/muhrec/src/piercingpointdialog.h:21:9: warning: 'PiercingPointDialog::exec' hides overloaded virtual function [-Woverloaded-virtual]
    int exec(ReconConfig &config);
        ^
/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers/qdialog.h:92:17: note: hidden overloaded virtual function 'QDialog::exec' declared here: different number of parameters (0 vs 1)
    virtual int exec();
                ^
5 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o referencefiledlg.o ../../imagingsuite/applications/muhrec/src/referencefiledlg.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o globalsettingsdialog.o ../../imagingsuite/applications/muhrec/src/globalsettingsdialog.cpp
In file included from ../../imagingsuite/applications/muhrec/src/globalsettingsdialog.cpp:1:
In file included from ../../imagingsuite/applications/muhrec/src/globalsettingsdialog.h:6:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_muhrecmainwindow.o moc_muhrecmainwindow.cpp
In file included from moc_muhrecmainwindow.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/muhrecmainwindow.h:9:
In file included from ../../imagingsuite/applications/muhrec/src/PreProcModuleConfigurator.h:12:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_configuregeometrydialog.o moc_configuregeometrydialog.cpp
In file included from moc_configuregeometrydialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/configuregeometrydialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
In file included from moc_configuregeometrydialog.cpp:9:
./../../imagingsuite/applications/muhrec/src/configuregeometrydialog.h:24:17: warning: 'ConfigureGeometryDialog::exec' hides overloaded virtual function [-Woverloaded-virtual]
    virtual int exec(ReconConfig &config);
                ^
/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers/qdialog.h:92:17: note: hidden overloaded virtual function 'QDialog::exec' declared here: different number of parameters (0 vs 1)
    virtual int exec();
                ^
5 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_findskiplistdialog.o moc_findskiplistdialog.cpp
In file included from moc_findskiplistdialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/findskiplistdialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_recondialog.o moc_recondialog.cpp
In file included from moc_recondialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/recondialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconEngine.h:19:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/PreprocModuleBase.h:29:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_viewgeometrylistdialog.o moc_viewgeometrylistdialog.cpp
In file included from moc_viewgeometrylistdialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/viewgeometrylistdialog.h:12:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_preferencesdialog.o moc_preferencesdialog.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_dialogtoobig.o moc_dialogtoobig.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_piercingpointdialog.o moc_piercingpointdialog.cpp
In file included from moc_piercingpointdialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/piercingpointdialog.h:5:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
In file included from moc_piercingpointdialog.cpp:9:
./../../imagingsuite/applications/muhrec/src/piercingpointdialog.h:21:9: warning: 'PiercingPointDialog::exec' hides overloaded virtual function [-Woverloaded-virtual]
    int exec(ReconConfig &config);
        ^
/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers/qdialog.h:92:17: note: hidden overloaded virtual function 'QDialog::exec' declared here: different number of parameters (0 vs 1)
    virtual int exec();
                ^
5 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_referencefiledlg.o moc_referencefiledlg.cpp
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -pipe -stdlib=libc++ -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -fPIC -O2 -O2 -std=gnu++11 -Wall -W -fPIC -DVERSION=\"4.1\" -DQT_NO_DEBUG -DQT_PRINTSUPPORT_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_CONCURRENT_LIB -DQT_CORE_LIB -I../../imagingsuite/applications/muhrec/src -I. -I/opt/local/include -I/opt/local/include/libxml2 -I../../imagingsuite/external/src/linalg -I../../imagingsuite/core/kipl/kipl/include -I../../imagingsuite/GUI/qt/QtModuleConfigure -I../../imagingsuite/GUI/qt/QtAddons -I../../imagingsuite/GUI/qt/QtImaging -I../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include -I../../imagingsuite/core/modules/ModuleConfig/include -I/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../core/modules/ReaderConfig/include -I../../imagingsuite/core/algorithms/ImagingAlgorithms/include -I../../imagingsuite/external/mac/include -I/Applications/Qt58/5.8/clang_64/lib/QtPrintSupport.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCharts.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtWidgets.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtGui.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtConcurrent.framework/Headers -I/Applications/Qt58/5.8/clang_64/lib/QtCore.framework/Headers -I. -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/OpenGL.framework/Headers -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/System/Library/Frameworks/AGL.framework/Headers -I. -I/Applications/Qt58/5.8/clang_64/mkspecs/macx-clang -F/Applications/Qt58/5.8/clang_64/lib -o moc_globalsettingsdialog.o moc_globalsettingsdialog.cpp
In file included from moc_globalsettingsdialog.cpp:9:
In file included from ./../../imagingsuite/applications/muhrec/src/globalsettingsdialog.h:6:
In file included from ../../imagingsuite/frameworks/tomography/Framework/ReconFramework/include/ReconConfig.h:19:
In file included from ../../imagingsuite/core/kipl/kipl/include/io/io_stack.h:18:
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:100: warning: unused parameter 'first_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                   ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:464:120: warning: unused parameter 'last_slice' [-Wunused-parameter]
int WriteNexusFloat(kipl::base::TImage<ImgType,NDim> &img, const char *fname, float p_size, size_t first_slice, size_t last_slice) {
                                                                                                                       ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:622:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFileFloat(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
../../imagingsuite/core/kipl/kipl/include/io/io_nexus.h:675:107: warning: unused parameter 'img' [-Wunused-parameter]
int PrepareNeXusFile16bit(const char *fname, size_t *dims, float p_size, kipl::base::TImage<ImgType,NDim> img) {
                                                                                                          ^
4 warnings generated.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -headerpad_max_install_names -stdlib=libc++ -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -mmacosx-version-min=10.9  -Wl,-rpath,/Applications/Qt58/5.8/clang_64/lib -o ../../Applications/muhrec.app/Contents/MacOS/muhrec main.o muhrecmainwindow.o MuhrecInteractor.o configuregeometrydialog.o findskiplistdialog.o recondialog.o PreProcModuleConfigurator.o stdafx.o viewgeometrylistdialog.o preferencesdialog.o dialogtoobig.o piercingpointdialog.o referencefiledlg.o globalsettingsdialog.o moc_muhrecmainwindow.o moc_configuregeometrydialog.o moc_findskiplistdialog.o moc_recondialog.o moc_viewgeometrylistdialog.o moc_preferencesdialog.o moc_dialogtoobig.o moc_piercingpointdialog.o moc_referencefiledlg.o moc_globalsettingsdialog.o   -L/opt/local/lib -F/Applications/Qt58/5.8/clang_64/lib -ltiff -lxml2 -L/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../../lib/ -lkipl -lModuleConfig -lReconFramework -lQtAddons -lQtModuleConfigure -lImagingAlgorithms -lReaderConfig -lQtImaging -L/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/src/../../../external/mac/lib/ -lNeXus.1.0.0 -lNeXusCPP.1.0.0 -framework QtPrintSupport -framework QtWidgets -framework QtGui -framework QtCore -framework DiskArbitration -framework IOKit -framework QtCharts -F/Applications/Qt58//5.8/clang_64/lib -framework QtConcurrent -framework OpenGL -framework AGL 
make: Nothing to be done for `first'.
Build tests
[ImagingSuite_OSX_10.12] $ /bin/sh -xe /var/folders/s0/5hnhknz118q2bjcjw2thq5jr0000gn/T/jenkins7904832077813185180.sh
+ export PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin/
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin/
+ export QTBINPATH=/Applications/Qt58/5.8/clang_64/bin
+ QTBINPATH=/Applications/Qt58/5.8/clang_64/bin
+ export QT_HOME=/Applications/Qt58/5.8/clang_64
+ QT_HOME=/Applications/Qt58/5.8/clang_64
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
+ cd /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac
+ /bin/sh -xe ./deploy_muhrec_mac_debug.sh
+ DIRECTORY=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ DEST=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app
+ REPOSPATH=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
+ QTPATH=/Applications/Qt58/5.8/clang_64/bin
++ git rev-parse --short HEAD
+ GITVER=41ccfef
+ '[' '!' -d /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed ']'
+ mkdir /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ echo /Applications/Qt58/5.8/clang_64/bin
/Applications/Qt58/5.8/clang_64/bin
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
+ cp -r /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/Applications/MuhRec.app /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ pushd .
~/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac ~/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac
+ CPCMD=cp
+ cd /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents
+ echo 'This is where it lands...'
This is where it lands...
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents
+ '[' '!' -d ./Frameworks ']'
+ mkdir ./Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libImagingAlgorithms.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libModuleConfig.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libQtAddons.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libQtImaging.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReaderConfig.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReaderGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libQtModuleConfigure.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReconFramework.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReconAlgorithms.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libStdBackProjectors.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libStdPreprocModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libkipl.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libStdPreprocModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libInspectorModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libInspectorModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libFDKBackProjectors.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libNeXus.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libNeXusCPP.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5.10.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5_cpp.11.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5_hl.10.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libsz.2.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Frameworks
+ '[' -e /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/Applications/muhrecCLI ']'
+ rm -f './MacOS/*.dylib'
+ cd Frameworks
+ rm -f '*.1.0.dylib'
+ rm -f '*.1.dylib'
+ '[' -e /opt/local/lib/libzstd.1.dylib ']'
++ ls libFDKBackProjectors.1.0.0.dylib libImagingAlgorithms.1.0.0.dylib libInspectorModules.1.0.0.dylib libInspectorModulesGUI.1.0.0.dylib libModuleConfig.1.0.0.dylib libNeXus.1.0.0.dylib libNeXusCPP.1.0.0.dylib libQtAddons.1.0.0.dylib libQtImaging.1.0.0.dylib libQtModuleConfigure.1.0.0.dylib libReaderConfig.1.0.0.dylib libReaderGUI.1.0.0.dylib libReconAlgorithms.1.0.0.dylib libReconFramework.1.0.0.dylib libStdBackProjectors.1.0.0.dylib libStdPreprocModules.1.0.0.dylib libStdPreprocModulesGUI.1.0.0.dylib libkipl.1.0.0.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libFDKBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libFDKBackProjectors.1.0.0.dylib libFDKBackProjectors.1.0.dylib
++ basename libFDKBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libFDKBackProjectors.1.0.0.dylib libFDKBackProjectors.1.dylib
++ basename libFDKBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libFDKBackProjectors.1.0.0.dylib libFDKBackProjectors.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingAlgorithms.1.0.0.dylib libImagingAlgorithms.1.0.dylib
++ basename libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingAlgorithms.1.0.0.dylib libImagingAlgorithms.1.dylib
++ basename libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingAlgorithms.1.0.0.dylib libImagingAlgorithms.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libInspectorModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModules.1.0.0.dylib libInspectorModules.1.0.dylib
++ basename libInspectorModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModules.1.0.0.dylib libInspectorModules.1.dylib
++ basename libInspectorModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModules.1.0.0.dylib libInspectorModules.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libInspectorModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModulesGUI.1.0.0.dylib libInspectorModulesGUI.1.0.dylib
++ basename libInspectorModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModulesGUI.1.0.0.dylib libInspectorModulesGUI.1.dylib
++ basename libInspectorModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libInspectorModulesGUI.1.0.0.dylib libInspectorModulesGUI.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libModuleConfig.1.0.0.dylib libModuleConfig.1.0.dylib
++ basename libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libModuleConfig.1.0.0.dylib libModuleConfig.1.dylib
++ basename libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libModuleConfig.1.0.0.dylib libModuleConfig.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXus.1.0.0.dylib libNeXus.1.0.dylib
++ basename libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXus.1.0.0.dylib libNeXus.1.dylib
++ basename libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXus.1.0.0.dylib libNeXus.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXusCPP.1.0.0.dylib libNeXusCPP.1.0.dylib
++ basename libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXusCPP.1.0.0.dylib libNeXusCPP.1.dylib
++ basename libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXusCPP.1.0.0.dylib libNeXusCPP.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtAddons.1.0.0.dylib libQtAddons.1.0.dylib
++ basename libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtAddons.1.0.0.dylib libQtAddons.1.dylib
++ basename libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtAddons.1.0.0.dylib libQtAddons.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libQtImaging.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtImaging.1.0.0.dylib libQtImaging.1.0.dylib
++ basename libQtImaging.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtImaging.1.0.0.dylib libQtImaging.1.dylib
++ basename libQtImaging.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtImaging.1.0.0.dylib libQtImaging.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtModuleConfigure.1.0.0.dylib libQtModuleConfigure.1.0.dylib
++ basename libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtModuleConfigure.1.0.0.dylib libQtModuleConfigure.1.dylib
++ basename libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtModuleConfigure.1.0.0.dylib libQtModuleConfigure.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderConfig.1.0.0.dylib libReaderConfig.1.0.dylib
++ basename libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderConfig.1.0.0.dylib libReaderConfig.1.dylib
++ basename libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderConfig.1.0.0.dylib libReaderConfig.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderGUI.1.0.0.dylib libReaderGUI.1.0.dylib
++ basename libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderGUI.1.0.0.dylib libReaderGUI.1.dylib
++ basename libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderGUI.1.0.0.dylib libReaderGUI.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReconAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconAlgorithms.1.0.0.dylib libReconAlgorithms.1.0.dylib
++ basename libReconAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconAlgorithms.1.0.0.dylib libReconAlgorithms.1.dylib
++ basename libReconAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconAlgorithms.1.0.0.dylib libReconAlgorithms.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReconFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconFramework.1.0.0.dylib libReconFramework.1.0.dylib
++ basename libReconFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconFramework.1.0.0.dylib libReconFramework.1.dylib
++ basename libReconFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s libReconFramework.1.0.0.dylib libReconFramework.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libStdBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdBackProjectors.1.0.0.dylib libStdBackProjectors.1.0.dylib
++ basename libStdBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdBackProjectors.1.0.0.dylib libStdBackProjectors.1.dylib
++ basename libStdBackProjectors.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdBackProjectors.1.0.0.dylib libStdBackProjectors.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libStdPreprocModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModules.1.0.0.dylib libStdPreprocModules.1.0.dylib
++ basename libStdPreprocModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModules.1.0.0.dylib libStdPreprocModules.1.dylib
++ basename libStdPreprocModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModules.1.0.0.dylib libStdPreprocModules.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libStdPreprocModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModulesGUI.1.0.0.dylib libStdPreprocModulesGUI.1.0.dylib
++ basename libStdPreprocModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModulesGUI.1.0.0.dylib libStdPreprocModulesGUI.1.dylib
++ basename libStdPreprocModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libStdPreprocModulesGUI.1.0.0.dylib libStdPreprocModulesGUI.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s libkipl.1.0.0.dylib libkipl.1.0.dylib
++ basename libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s libkipl.1.0.0.dylib libkipl.1.dylib
++ basename libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s libkipl.1.0.0.dylib libkipl.dylib
+ cd ..
+ '[' '!' -d ./Resources ']'
+ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/Resources/defaults_linux.xml /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/Resources/defaults_mac.xml /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/Resources/defaults_windows.xml /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/muhrec/Resources/muhrec3.icns ./Resources
+ sed -i.bak s+com.yourcompany+ch.imagingscience+g /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/Info.plist
+ echo 'copy plugins'
copy plugins
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents
+ '[' '!' -d ./PlugIns ']'
+ mkdir ./PlugIns
+ '[' '!' -d ./PlugIns/platforms ']'
+ mkdir ./PlugIns/platforms
+ '[' '!' -f ./PlugIns/platforms/libqcocoa.dylib ']'
+ '[' -f /Applications/Qt58/5.8/clang_64/bin/plugins/platforms/libqcocoa.dylib ']'
+ '[' '!' -d ./PlugIns/printsupport ']'
+ mkdir ./PlugIns/printsupport
+ '[' '!' -f ./PlugIns/printsupport/libcocoaprintersupport.dylib ']'
+ '[' -f /Applications/Qt58/5.8/clang_64/bin/plugins/printsupport/libcocoaprintersupport.dylib ']'
+ '[' '!' -d ./PlugIns/accessible ']'
+ mkdir ./PlugIns/accessible
+ '[' '!' -f ./PlugIns/accessible/libqtaccessiblewidgets.dylib ']'
+ '[' -f '/Applications/Qt58/5.8/clang_64/bin/plugins/accessible/libqtaccessiblewidgets.dylib]'
./deploy_muhrec_mac_debug.sh: line 117: [: missing `]'
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents
+ ls PlugIns
accessible
platforms
printsupport
+ cd /Applications/Qt58/5.8/clang_64/bin
+ echo 'Do deploy...'
Do deploy...
+ ./macdeployqt /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app
ERROR: no file at "/usr/lib/libkipl.1.dylib"
ERROR: no file at "/usr/lib/libModuleConfig.1.dylib"
ERROR: no file at "/usr/lib/libReconFramework.1.dylib"
ERROR: no file at "/usr/lib/libQtAddons.1.dylib"
ERROR: no file at "/usr/lib/libQtModuleConfigure.1.dylib"
ERROR: no file at "/usr/lib/libImagingAlgorithms.1.dylib"
ERROR: no file at "/usr/lib/libReaderConfig.1.dylib"
ERROR: no file at "/usr/lib/libQtImaging.1.dylib"
ERROR: no file at "/usr/lib/libNeXus.1.dylib"
ERROR: no file at "/usr/lib/libNeXusCPP.1.dylib"
ERROR: no file at "/usr/local/opt/szip/lib/libsz.2.dylib"
ERROR: no file at "/usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5.10.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib"
ERROR: no file at "/usr/lib/libStdPreprocModules.1.dylib"
+ cd /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app/Contents/MacOS
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib MuhRec
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib MuhRec
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib MuhRec
+ install_name_tool -change libQtImaging.1.dylib @executable_path/../Frameworks/libQtImaging.1.dylib MuhRec
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib MuhRec
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib MuhRec
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib MuhRec
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib MuhRec
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib MuhRec
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib MuhRec
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib MuhRec
+ install_name_tool -change libReaderGUI.1.dylib @executable_path/../Frameworks/libReaderGUI.1.dylib MuhRec
+ '[' -e muhrecCLI ']'
+ cd ../Frameworks
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libModuleConfig.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libQtAddons.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libQtImaging.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libImagingAlgorithms.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libkipl.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libkipl.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libReconFramework.1.0.0.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libNexus.1.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libNexusCPP.1.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libNexusCPP.1.dylib
+ install_name_tool -change /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib @executable_path/../Frameworks/libhdf5_cpp.11.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib @executable_path/../Frameworks/libhdf5_hl.10.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib @executable_path/../Frameworks/libhdf5_cpp.11.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib @executable_path/../Frameworks/libhdf5_hl.10.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib libhdf5.10.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib libhdf5_cpp.11.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib libhdf5_hl.10.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5_hl.10.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libFDKBackProjectors.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libFDKBackProjectors.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libFDKBackProjectors.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libFDKBackProjectors.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libFDKBackProjectors.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libInspectorModules.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libInspectorModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReconAlgorithms.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libStdBackprojectors.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libStdBackprojectors.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libStdBackprojectors.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libStdBackprojectors.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libStdBackprojectors.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libStdPreprocModules.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libReconFramework.1.dylib @executable_path/../Frameworks/libReconFramework.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libStdPreprocModules.1.dylib @executable_path/../Frameworks/libStdPreprocModules.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libStdPreprocModulesGUI.1.0.0.dylib
+ rm -rf /tmp/muhrec
+ '[' '!' -d /tmp/muhrec ']'
+ mkdir /tmp/muhrec
+ '[' '!' -e tmp/muhrec/Applications ']'
+ ln -s /Applications /tmp/muhrec
+ cp -r /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec.app /tmp/muhrec
++ date +%Y%m%d
+ hdiutil create -volname MuhRec -srcfolder /tmp/muhrec -ov -format UDZO /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec_build-41ccfef-20190621.dmg
created: /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/MuhRec_build-41ccfef-20190621.dmg
+ /bin/sh -xe ./deploy_kiptool_mac.sh
+ DIRECTORY=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ REPOSPATH=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
+ QTPATH=/Applications/Qt58/5.8/clang_64/bin/..
+ DEST=/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app
++ git rev-parse --short HEAD
+ GITVER=41ccfef
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ echo /Applications/Qt58/5.8/clang_64/bin/..
/Applications/Qt58/5.8/clang_64/bin/..
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app
+ echo /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12
+ echo start
start
+ '[' '!' -d /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed ']'
+ echo 'Copy app'
Copy app
+ cp -r /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/Applications/KipTool.app /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed
+ pushd .
~/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac ~/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac
+ CPCMD=cp
+ cd /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents
+ '[' '!' -d ./Frameworks ']'
+ mkdir ./Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libProcessFramework.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libAdvancedFilterModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libAdvancedFilterModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libBaseModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libBaseModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libClassificationModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libClassificationModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libStatisticsModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libPorespaceModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libPCAModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libImagingModules.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libImagingModulesGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libkipl.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libModuleConfig.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libQtAddons.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libQtModuleConfigure.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libImagingAlgorithms.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReaderConfig.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/lib/libReaderGUI.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libNeXus.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libNeXusCPP.1.0.0.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5.10.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5_cpp.11.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libhdf5_hl.10.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
++ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/external/mac/lib/libsz.2.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Frameworks
+ rm -f './MacOS/*.dylib'
++ ls ./Frameworks/libAdvancedFilterModules.1.0.0.dylib ./Frameworks/libAdvancedFilterModulesGUI.1.0.0.dylib ./Frameworks/libBaseModules.1.0.0.dylib ./Frameworks/libBaseModulesGUI.1.0.0.dylib ./Frameworks/libClassificationModules.1.0.0.dylib ./Frameworks/libClassificationModulesGUI.1.0.0.dylib ./Frameworks/libImagingAlgorithms.1.0.0.dylib ./Frameworks/libImagingModules.1.0.0.dylib ./Frameworks/libImagingModulesGUI.1.0.0.dylib ./Frameworks/libModuleConfig.1.0.0.dylib ./Frameworks/libNeXus.1.0.0.dylib ./Frameworks/libNeXusCPP.1.0.0.dylib ./Frameworks/libPCAModules.1.0.0.dylib ./Frameworks/libPorespaceModules.1.0.0.dylib ./Frameworks/libProcessFramework.1.0.0.dylib ./Frameworks/libQtAddons.1.0.0.dylib ./Frameworks/libQtModuleConfigure.1.0.0.dylib ./Frameworks/libReaderConfig.1.0.0.dylib ./Frameworks/libReaderGUI.1.0.0.dylib ./Frameworks/libStatisticsModules.1.0.0.dylib ./Frameworks/libkipl.1.0.0.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libAdvancedFilterModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libAdvancedFilterModules.1.0.0.dylib ./MacOS/libAdvancedFilterModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libAdvancedFilterModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libAdvancedFilterModulesGUI.1.0.0.dylib ./MacOS/libAdvancedFilterModulesGUI.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libBaseModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libBaseModules.1.0.0.dylib ./MacOS/libBaseModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libBaseModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libBaseModulesGUI.1.0.0.dylib ./MacOS/libBaseModulesGUI.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libClassificationModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libClassificationModules.1.0.0.dylib ./MacOS/libClassificationModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libClassificationModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libClassificationModulesGUI.1.0.0.dylib ./MacOS/libClassificationModulesGUI.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libImagingAlgorithms.1.0.0.dylib ./MacOS/libImagingAlgorithms.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libImagingModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libImagingModules.1.0.0.dylib ./MacOS/libImagingModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libImagingModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libImagingModulesGUI.1.0.0.dylib ./MacOS/libImagingModulesGUI.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libModuleConfig.1.0.0.dylib ./MacOS/libModuleConfig.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libNeXus.1.0.0.dylib ./MacOS/libNeXus.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libNeXusCPP.1.0.0.dylib ./MacOS/libNeXusCPP.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libPCAModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libPCAModules.1.0.0.dylib ./MacOS/libPCAModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libPorespaceModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libPorespaceModules.1.0.0.dylib ./MacOS/libPorespaceModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libProcessFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libProcessFramework.1.0.0.dylib ./MacOS/libProcessFramework.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libQtAddons.1.0.0.dylib ./MacOS/libQtAddons.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libQtModuleConfigure.1.0.0.dylib ./MacOS/libQtModuleConfigure.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libReaderConfig.1.0.0.dylib ./MacOS/libReaderConfig.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libReaderGUI.1.0.0.dylib ./MacOS/libReaderGUI.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libStatisticsModules.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libStatisticsModules.1.0.0.dylib ./MacOS/libStatisticsModules.1.dylib
+ for f in '`ls ./Frameworks/*.1.0.0.dylib`'
++ basename ./Frameworks/libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s .././Frameworks/libkipl.1.0.0.dylib ./MacOS/libkipl.1.dylib
+ cd Frameworks
+ rm -f '*.1.0.dylib'
+ rm -f '*.1.dylib'
+ '[' -e /opt/local/lib/libzstd.1.dylib ']'
++ ls libAdvancedFilterModules.1.0.0.dylib libAdvancedFilterModulesGUI.1.0.0.dylib libBaseModules.1.0.0.dylib libBaseModulesGUI.1.0.0.dylib libClassificationModules.1.0.0.dylib libClassificationModulesGUI.1.0.0.dylib libImagingAlgorithms.1.0.0.dylib libImagingModules.1.0.0.dylib libImagingModulesGUI.1.0.0.dylib libModuleConfig.1.0.0.dylib libNeXus.1.0.0.dylib libNeXusCPP.1.0.0.dylib libPCAModules.1.0.0.dylib libPorespaceModules.1.0.0.dylib libProcessFramework.1.0.0.dylib libQtAddons.1.0.0.dylib libQtModuleConfigure.1.0.0.dylib libReaderConfig.1.0.0.dylib libReaderGUI.1.0.0.dylib libStatisticsModules.1.0.0.dylib libkipl.1.0.0.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libAdvancedFilterModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libAdvancedFilterModules.1.0.0.dylib libAdvancedFilterModules.1.0.dylib
++ basename libAdvancedFilterModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libAdvancedFilterModules.1.0.0.dylib libAdvancedFilterModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libAdvancedFilterModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libAdvancedFilterModulesGUI.1.0.0.dylib libAdvancedFilterModulesGUI.1.0.dylib
++ basename libAdvancedFilterModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libAdvancedFilterModulesGUI.1.0.0.dylib libAdvancedFilterModulesGUI.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libBaseModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libBaseModules.1.0.0.dylib libBaseModules.1.0.dylib
++ basename libBaseModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libBaseModules.1.0.0.dylib libBaseModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libBaseModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libBaseModulesGUI.1.0.0.dylib libBaseModulesGUI.1.0.dylib
++ basename libBaseModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libBaseModulesGUI.1.0.0.dylib libBaseModulesGUI.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libClassificationModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libClassificationModules.1.0.0.dylib libClassificationModules.1.0.dylib
++ basename libClassificationModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libClassificationModules.1.0.0.dylib libClassificationModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libClassificationModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libClassificationModulesGUI.1.0.0.dylib libClassificationModulesGUI.1.0.dylib
++ basename libClassificationModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libClassificationModulesGUI.1.0.0.dylib libClassificationModulesGUI.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingAlgorithms.1.0.0.dylib libImagingAlgorithms.1.0.dylib
++ basename libImagingAlgorithms.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingAlgorithms.1.0.0.dylib libImagingAlgorithms.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libImagingModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingModules.1.0.0.dylib libImagingModules.1.0.dylib
++ basename libImagingModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingModules.1.0.0.dylib libImagingModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libImagingModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingModulesGUI.1.0.0.dylib libImagingModulesGUI.1.0.dylib
++ basename libImagingModulesGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libImagingModulesGUI.1.0.0.dylib libImagingModulesGUI.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libModuleConfig.1.0.0.dylib libModuleConfig.1.0.dylib
++ basename libModuleConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libModuleConfig.1.0.0.dylib libModuleConfig.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXus.1.0.0.dylib libNeXus.1.0.dylib
++ basename libNeXus.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXus.1.0.0.dylib libNeXus.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXusCPP.1.0.0.dylib libNeXusCPP.1.0.dylib
++ basename libNeXusCPP.1.0.0.dylib .1.0.0.dylib
+ ln -s libNeXusCPP.1.0.0.dylib libNeXusCPP.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libPCAModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libPCAModules.1.0.0.dylib libPCAModules.1.0.dylib
++ basename libPCAModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libPCAModules.1.0.0.dylib libPCAModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libPorespaceModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libPorespaceModules.1.0.0.dylib libPorespaceModules.1.0.dylib
++ basename libPorespaceModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libPorespaceModules.1.0.0.dylib libPorespaceModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libProcessFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s libProcessFramework.1.0.0.dylib libProcessFramework.1.0.dylib
++ basename libProcessFramework.1.0.0.dylib .1.0.0.dylib
+ ln -s libProcessFramework.1.0.0.dylib libProcessFramework.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtAddons.1.0.0.dylib libQtAddons.1.0.dylib
++ basename libQtAddons.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtAddons.1.0.0.dylib libQtAddons.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtModuleConfigure.1.0.0.dylib libQtModuleConfigure.1.0.dylib
++ basename libQtModuleConfigure.1.0.0.dylib .1.0.0.dylib
+ ln -s libQtModuleConfigure.1.0.0.dylib libQtModuleConfigure.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderConfig.1.0.0.dylib libReaderConfig.1.0.dylib
++ basename libReaderConfig.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderConfig.1.0.0.dylib libReaderConfig.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderGUI.1.0.0.dylib libReaderGUI.1.0.dylib
++ basename libReaderGUI.1.0.0.dylib .1.0.0.dylib
+ ln -s libReaderGUI.1.0.0.dylib libReaderGUI.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libStatisticsModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libStatisticsModules.1.0.0.dylib libStatisticsModules.1.0.dylib
++ basename libStatisticsModules.1.0.0.dylib .1.0.0.dylib
+ ln -s libStatisticsModules.1.0.0.dylib libStatisticsModules.1.dylib
+ for f in '`ls *.1.0.0.dylib`'
++ basename libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s libkipl.1.0.0.dylib libkipl.1.0.dylib
++ basename libkipl.1.0.0.dylib .1.0.0.dylib
+ ln -s libkipl.1.0.0.dylib libkipl.1.dylib
+ cd ..
+ '[' '!' -d ./Resources ']'
+ cp /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kip_icon.icns /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_download.png /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_download.svg /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_icon.icns /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_icon.ico /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_icon.png /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/applications/kiptool/resources/kiptool_icon.svg ./Resources
+ echo 'copy plugins'
copy plugins
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents
+ '[' '!' -d ./PlugIns ']'
+ mkdir ./PlugIns
+ '[' '!' -d ./PlugIns/platforms ']'
+ mkdir ./PlugIns/platforms
+ '[' '!' -f ./PlugIns/platforms/libqcocoa.dylib ']'
+ '[' -f /Applications/Qt58/5.8/clang_64/bin/../plugins/platforms/libqcocoa.dylib ']'
+ cp /Applications/Qt58/5.8/clang_64/bin/../plugins/platforms/libqcocoa.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/PlugIns/platforms/
+ '[' '!' -d ./PlugIns/printsupport ']'
+ mkdir ./PlugIns/printsupport
+ '[' '!' -f ./PlugIns/printsupport/libcocoaprintersupport.dylib ']'
+ '[' -f /Applications/Qt58/5.8/clang_64/bin/../plugins/printsupport/libcocoaprintersupport.dylib ']'
+ cp /Applications/Qt58/5.8/clang_64/bin/../plugins/printsupport/libcocoaprintersupport.dylib /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/PlugIns/printsupport/
+ '[' '!' -d ./PlugIns/accessible ']'
+ mkdir ./PlugIns/accessible
+ '[' '!' -f ./PlugIns/accessible/libqtaccessiblewidgets.dylib ']'
+ '[' -f '/Applications/Qt58/5.8/clang_64/bin/../plugins/accessible/libqtaccessiblewidgets.dylib]'
./deploy_kiptool_mac.sh: line 114: [: missing `]'
+ pwd
/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents
+ ls PlugIns
accessible
platforms
printsupport
+ popd
~/Jenkins/workspace/ImagingSuite_OSX_10.12/imagingsuite/deploy/mac
+ sed -i.bak s+com.yourcompany+ch.imagingscience+g /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/Info.plist
+ cd /Applications/Qt58/5.8/clang_64/bin
+ echo 'Do deploy ...'
Do deploy ...
+ pwd
/Applications/Qt58/5.8/clang_64/bin
+ ./macdeployqt /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app
ERROR: no file at "/usr/lib/libNeXus.1.dylib"
ERROR: no file at "/usr/lib/libNeXusCPP.1.dylib"
ERROR: no file at "/usr/lib/libkipl.1.dylib"
ERROR: no file at "/usr/lib/libModuleConfig.1.dylib"
ERROR: no file at "/usr/lib/libProcessFramework.1.dylib"
ERROR: no file at "/usr/lib/libQtAddons.1.dylib"
ERROR: no file at "/usr/lib/libQtModuleConfigure.1.dylib"
ERROR: no file at "/usr/lib/libReaderConfig.1.dylib"
ERROR: no file at "/usr/lib/libReaderGUI.1.dylib"
ERROR: no file at "/usr/lib/libImagingAlgorithms.1.dylib"
ERROR: no file at "/usr/lib/libAdvancedFilterModules.1.dylib"
ERROR: no file at "/usr/lib/libBaseModules.1.dylib"
ERROR: no file at "/usr/lib/libClassificationModules.1.dylib"
ERROR: no file at "/usr/local/opt/szip/lib/libsz.2.dylib"
ERROR: no file at "/usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib"
ERROR: no file at "/usr/lib/libImagingModules.1.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5.10.dylib"
ERROR: no file at "/usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib"
File exists, skip copy: "/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/PlugIns/platforms/libqcocoa.dylib"
File exists, skip copy: "/Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/PlugIns/printsupport/libcocoaprintersupport.dylib"
+ cd /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app/Contents/MacOS
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib KipTool
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib KipTool
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib KipTool
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib KipTool
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib KipTool
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib KipTool
+ install_name_tool -change libReaderGUI.1.dylib @executable_path/../Frameworks/libReaderGUI.1.dylib KipTool
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib KipTool
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib KipTool
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib KipTool
+ cd ../Frameworks
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libModuleConfig.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libQtAddons.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libQtModuleConfigure.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libProcessFramework.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libProcessFramework.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libImagingAlgorithms.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libAdvancedFilterModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libAdvancedFilterModules.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libAdvancedFilterModules.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libReaderGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libkipl.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libkipl.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libProcessFramework.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libProcessFramework.1.0.0.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libNexus.1.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libNexusCPP.1.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libNexusCPP.1.dylib
+ install_name_tool -change /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/Cellar/hdf5/1.8.16_1/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib @executable_path/../Frameworks/libhdf5_cpp.11.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib @executable_path/../Frameworks/libhdf5_hl.10.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libNeXus.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib @executable_path/../Frameworks/libhdf5_cpp.11.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib @executable_path/../Frameworks/libhdf5.10.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib @executable_path/../Frameworks/libhdf5_hl.10.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libNeXusCPP.1.0.0.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5.10.dylib libhdf5.10.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5.10.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_cpp.11.dylib libhdf5_cpp.11.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5_cpp.11.dylib
+ install_name_tool -change /usr/local/opt/hdf5/lib/libhdf5_hl.10.dylib libhdf5_hl.10.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/local/opt/szip/lib/libsz.2.dylib @executable_path/../Frameworks/libsz.2.dylib libhdf5_hl.10.dylib
+ install_name_tool -change /usr/lib/libz.1.dylib @executable_path/../Frameworks/libz.1.dylib libhdf5_hl.10.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libReaderConfig.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libImagingModules.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libImagingAlgorithms.1.dylib @executable_path/../Frameworks/libImagingAlgorithms.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libImagingModules.1.dylib @executable_path/../Frameworks/libImagingModules.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libImagingModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libBaseModules.1.0.0.dylib
+ install_name_tool -change libReaderConfig.1.dylib @executable_path/../Frameworks/libReaderConfig.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libBaseModules.1.dylib @executable_path/../Frameworks/libImagingModules.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libBaseModulesGUI.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libClassificationModules.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libClassificationModules.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libClassificationModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libClassificationModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libClassificationModules.1.0.0.dylib
+ install_name_tool -change libkipl.1.dylib @executable_path/../Frameworks/libkipl.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libModuleConfig.1.dylib @executable_path/../Frameworks/libModuleConfig.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libProcessFramework.1.dylib @executable_path/../Frameworks/libProcessFramework.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libClassificationModules.1.dylib @executable_path/../Frameworks/libClassificationModules.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtModuleConfigure.1.dylib @executable_path/../Frameworks/libQtModuleConfigure.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libAdvancedFilterModules.1.dylib @executable_path/../Frameworks/libAdvancedFilterModules.1.dylib libClassificationModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libAdvancedFilterModules.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libAdvancedFilterModules.1.0.0.dylib
+ install_name_tool -change libNeXus.1.dylib @executable_path/../Frameworks/libNeXus.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libNeXusCPP.1.dylib @executable_path/../Frameworks/libNeXusCPP.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libQtAddons.1.dylib @executable_path/../Frameworks/libQtAddons.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ install_name_tool -change libAdvancedFilterModules.1.dylib @executable_path/../Frameworks/libAdvancedFilterModules.1.dylib libAdvancedFilterModulesGUI.1.0.0.dylib
+ rm -rf /tmp/kiptool
+ '[' '!' -d /tmp/kiptool ']'
+ mkdir /tmp/kiptool
+ '[' '!' -e tmp/kiptool/Applications ']'
+ ln -s /Applications /tmp/kiptool
+ cp -r /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool.app /tmp/kiptool
++ date +%Y%m%d
+ hdiutil create -volname KipTool -srcfolder /tmp/kiptool -ov -format UDZO /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool_build-41ccfef-20190621.dmg
created: /Users/image/Jenkins/workspace/ImagingSuite_OSX_10.12/deployed/KipTool_build-41ccfef-20190621.dmg
Archiving artifacts
Finished: SUCCESS